Since description page doesn't say that mesh should be 100% convex, thus I assume it is a bug.
Here are few meshes I experimented with:
https://dl.dropboxusercontent.com/u/58150516/q1/test_obj.7z
test_0
Worst case. Doesn't show at all in editor.
For some reason I can't create new brushes after opening generated map.
test_1, test_2
Only part of original mesh exist in resulting map.
test_3
Fully convex. Works flawlessly.
Default conversion settings used.
GtkRadiant 1.6
Any additional info I can provide?